Index

A

add() (gc3libs.core.Core method) (gc3libs.core.Engine method) (gc3libs.session.Session method) (gc3libs.workflow.ParallelTaskCollection method) (gc3libs.workflow.TaskCollection method) add_params() (gc3libs.authentication.Auth method) adjoin() (gc3libs.url.Url method) API append() (gc3libs.utils.History method) Application (class in gc3libs) application_name (gc3libs.Application attribute) ApplicationDescriptionError AppPotApplication (class in gc3libs.application.apppot)

Arc1Lrms (class in gc3libs.backends.arc1) ARC_CACHE_TIME (gc3libs.Default attribute) ARC_LOST_JOB_TIMEOUT (gc3libs.Default attribute) ArcLrms (class in gc3libs.backends.arc0) attach() (gc3libs.Task method) (gc3libs.workflow.ParallelTaskCollection method) (gc3libs.workflow.SequentialTaskCollection method) (gc3libs.workflow.TaskCollection method) Auth (class in gc3libs.authentication) auth_factory (gc3libs.config.Configuration attribute) authenticated() (gc3libs.backends.LRMS static method) AuthError

B

backup() (in module gc3libs.utils) basename_sans() (in module gc3libs.utils)

BatchSystem (class in gc3libs.backends.batch) bsub() (gc3libs.Application method)

C

cache_for() (in module gc3libs.utils) cancel_job() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) cat() (in module gc3libs.utils) close() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) cmdline() (gc3libs.Application method) Command-line Command-line option compatible_resources() (gc3libs.Application method) compute_nr_of_slots() (in module gc3libs.backends.sge) Configuration (class in gc3libs.config)

ConfigurationError configure_logger() (in module gc3libs) copy() (gc3libs.utils.Struct method) copy_recursively() (in module gc3libs.utils) copyfile() (in module gc3libs.utils) copytree() (in module gc3libs.utils) Core (class in gc3libs.core) count() (in module gc3libs.utils) count_jobs() (in module gc3libs.backends.pbs) (in module gc3libs.backends.sge) CPU Time

D

DataStagingError Default (class in gc3libs) defproperty() (in module gc3libs.utils) deploy_configuration_file() (in module gc3libs.utils) destroy() (gc3libs.session.Session method)

detach() (gc3libs.Task method) DetachedFromGridError dirname() (in module gc3libs.utils) DuplicateEntryError Duration (class in gc3libs.quantity)

E

Engine (class in gc3libs.core) Enum (class in gc3libs.utils) Error

exitcode (gc3libs.Run attribute) expansions() (gc3libs.template.Template method) (in module gc3libs.template)

F

FatalError fetch_output() (gc3libs.Application method) (gc3libs.Task method) (gc3libs.core.Core method) (gc3libs.core.Engine method) fetch_output_error() (gc3libs.Application method) first() (in module gc3libs.utils) flush() (gc3libs.session.Session method)

forget() (gc3libs.session.Session method) format_message() (gc3libs.utils.History method) free() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.Task method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) from_template() (in module gc3libs.utils)

G

GamessApplication (class in gc3libs.application.gamess) GamessAppPotApplication (class in gc3libs.application.gamess) gc3libs (module) gc3libs.application (module) gc3libs.application.apppot (module) gc3libs.application.gamess (module) gc3libs.application.rosetta (module) gc3libs.authentication (module) gc3libs.authentication.grid (module) gc3libs.authentication.ssh (module) gc3libs.backends (module) gc3libs.backends.arc0 (module) gc3libs.backends.arc1 (module) gc3libs.backends.batch (module) gc3libs.backends.lsf (module) gc3libs.backends.pbs (module) gc3libs.backends.sge (module) gc3libs.backends.shellcmd (module) gc3libs.backends.transport (module) gc3libs.config (module)

gc3libs.core (module) gc3libs.exceptions (module) gc3libs.persistence (module) gc3libs.quantity (module) gc3libs.session (module) gc3libs.template (module) gc3libs.url (module) gc3libs.utils (module) gc3libs.workflow (module) gc3utils (module) gc3utils.frontend (module) generic_filename_mapping() (in module gc3libs.backends.batch) get() (gc3libs.authentication.Auth method) get_epilogue_script() (gc3libs.backends.batch.BatchSystem method) get_jobid_from_submit_output() (gc3libs.backends.batch.BatchSystem method) get_prologue_script() (gc3libs.backends.batch.BatchSystem method) get_resource_status() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.lsf.LsfLrms method) (gc3libs.backends.pbs.PbsLrms method) (gc3libs.backends.sge.SgeLrms method) (gc3libs.backends.shellcmd.ShellcmdLrms method) get_resources() (gc3libs.core.Core method) get_results() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) getattr_nested() (in module gc3libs.utils)

H

History (class in gc3libs.utils)

I

ifelse() (in module gc3libs.utils) in_state() (gc3libs.Run method) info (gc3libs.Run attribute) InputFileError InternalError InvalidArgument

InvalidOperation InvalidResourceName InvalidType InvalidUsage InvalidValue irange() (in module gc3libs.utils)

J

Job

K

kill() (gc3libs.core.Core method) (gc3libs.Task method) (gc3libs.core.Engine method) (gc3libs.workflow.ParallelTaskCollection method) (gc3libs.workflow.SequentialTaskCollection method)

L

last() (gc3libs.utils.History method) list_ids() (gc3libs.session.Session method) list_names() (gc3libs.session.Session method) load() (gc3libs.config.Configuration method) (gc3libs.session.Session method) LoadError

lock() (in module gc3libs.utils) Log (in module gc3libs.utils) LRMS (class in gc3libs.backends) LsfLrms (class in gc3libs.backends.lsf)

M

main() (in module gc3utils.frontend) make_auth() (gc3libs.config.Configuration method) make_resources() (gc3libs.config.Configuration method) Memory (class in gc3libs.quantity)

merge_file() (gc3libs.config.Configuration method) mkdir() (in module gc3libs.utils) mkdir_with_backup() (in module gc3libs.utils)

N

new() (gc3libs.Task method) next() (gc3libs.workflow.SequentialTaskCollection method) NoConfigurationFile

NoneAuth (class in gc3libs.authentication) NoResources

O

OutputNotAvailableError

P

ParallelTaskCollection (class in gc3libs.workflow) parse_qhost_f() (in module gc3libs.backends.sge) parse_qstat_f() (in module gc3libs.backends.sge) PbsLrms (class in gc3libs.backends.pbs) peek() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.Task method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) (gc3libs.workflow.TaskCollection method) Persistent

PlusInfinity (class in gc3libs.utils) prettyprint() (in module gc3libs.utils) progress() (gc3libs.core.Engine method) (gc3libs.Task method) (gc3libs.workflow.ParallelTaskCollection method) progressive_number() (in module gc3libs.utils) PROXY_VALIDITY_THRESHOLD (gc3libs.Default attribute) Python Enhancement Proposals PEP 8

Q

qsub_pbs() (gc3libs.Application method) qsub_sge() (gc3libs.Application method)

Quantity (class in gc3libs.quantity)

R

rank_resources() (gc3libs.Application method) read_contents() (in module gc3libs.utils) RecoverableDataStagingError RecoverableError remove() (gc3libs.core.Core method) (gc3libs.core.Engine method) (gc3libs.session.Session method) (gc3libs.workflow.TaskCollection method) Resource retry() (gc3libs.workflow.RetryableTask method)

RetryableTask (class in gc3libs.workflow) returncode (gc3libs.Run attribute) RosettaApplication (class in gc3libs.application.rosetta) RosettaDockingApplication (class in gc3libs.application.rosetta) Run (class in gc3libs) Run.Arch (class in gc3libs) running() (gc3libs.Task method)

S

safe_repr() (in module gc3libs.utils) same_docstring_as() (in module gc3libs.utils) samefile() (in module gc3libs.utils) save() (gc3libs.session.Session method) save_all() (gc3libs.session.Session method) sbatch() (gc3libs.Application method) select_resource() (gc3libs.core.Core method) SequentialTaskCollection (class in gc3libs.workflow) Session (class in gc3libs.session) set_end_timestamp() (gc3libs.session.Session method) set_start_timestamp() (gc3libs.session.Session method) SgeLrms (class in gc3libs.backends.sge) ShellcmdLrms (class in gc3libs.backends.shellcmd) shellexit_to_returncode() (gc3libs.Run static method) signal (gc3libs.Run attribute) Singleton (class in gc3libs.utils)

StagedTaskCollection (class in gc3libs.workflow) State state (gc3libs.Run attribute) stats() (gc3libs.core.Engine method) (gc3libs.workflow.TaskCollection method) STDERR STDOUT stopped() (gc3libs.Task method) string_to_boolean() (in module gc3libs.utils) stripped() (in module gc3libs.utils) Struct (class in gc3libs.utils) submit() (gc3libs.core.Core method) (gc3libs.Task method) (gc3libs.core.Engine method) (gc3libs.workflow.ParallelTaskCollection method) (gc3libs.workflow.SequentialTaskCollection method) submit_error() (gc3libs.Application method) submit_job() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) submitted() (gc3libs.Task method) substitute() (gc3libs.template.Template method)

T

Task (class in gc3libs) TaskCollection (class in gc3libs.workflow) TaskError Template (class in gc3libs.template) terminated() (gc3libs.application.gamess.GamessApplication method) (gc3libs.Task method) (gc3libs.application.rosetta.RosettaApplication method) (gc3libs.workflow.TaskCollection method)

terminating() (gc3libs.Task method) test_file() (in module gc3libs.utils) to_bytes() (in module gc3libs.utils) to_timedelta() (gc3libs.quantity.Duration method)

U

UnexpectedStateError uniq() (in module gc3libs.utils) unknown() (gc3libs.Task method) UnknownJob UnknownJobState unlock() (in module gc3libs.utils) UnrecoverableDataStagingError UnrecoverableError

update_job_state() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method) (gc3libs.core.Core method) (gc3libs.core.Engine method) update_job_state_error() (gc3libs.Application method) update_resources() (gc3libs.core.Core method) update_state() (gc3libs.Task method) (gc3libs.workflow.ParallelTaskCollection method) (gc3libs.workflow.RetryableTask method) (gc3libs.workflow.SequentialTaskCollection method) (gc3libs.workflow.TaskCollection method) Url (class in gc3libs.url) UrlKeyDict (class in gc3libs.url) UrlValueDict (class in gc3libs.url)

V

validate_data() (gc3libs.backends.arc0.ArcLrms method) (gc3libs.backends.LRMS method) (gc3libs.backends.arc1.Arc1Lrms method) (gc3libs.backends.batch.BatchSystem method) (gc3libs.backends.shellcmd.ShellcmdLrms method)

W

wait() (gc3libs.Task method) Walltime

write_contents() (in module gc3libs.utils)

X

xrsl() (gc3libs.Application method)